rs258475042 SNP Detail

Summary

• ID
  rs258475042
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116957584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAGGGCC TGGTTCCAAA CGCTGGCCAG
  ACCCACTGAA GTTCCTGCAG GAGTCAGGTT GCAAAAGCCG CTCAAACCCC CGAGGATGCG
  GTTCTAGGGA CACCACCACC CCACCCCACC CCCTTCTTGA AAAGGACAGC CTGTGTCCCC
  A
  GAAGCCTCTG GCGCTGATTC AAATGTCTTC CCCCACAGTC TAGAAGTATC CTTCTGGCCA
  GGTTTCAGCT TACAGCCTGA CATTTCCTCT GGGTTTCCCT GGTGTGTCGT TCAGGGTGTG
  TTTGGGGTGG CAAAGCAGCT GACTCAGCTT                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321920208	CHEV_6_116930641	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258475042					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116957584 () rs orientation: forward

Symbol	Name	Function Class
Gm43929	predicted gene, 43929	1396 bp upstream
Rr637267	regulatory region 637267	within coordinates