rs258469013 SNP Detail

Summary

• ID
  rs258469013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83808752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTAGAGG GGCTGTGCGC
  AGTCCCGGGT GGCCAGACGA TCCCAGCCCC GACGCCTCAA CCCACCTGGC CGCGCGGACA
  ACGCCGCCCC GAGGTCCGCA CCACAGCACA GCGCCGCCTC CTAAGAGCGC GAGCCTCGGC
  GCACAAACGC TCGAGGTACC TCGGCCTCAC ACGCGCGTCT CGCCCCGCCC CCCAGCGCCA
  K
  TCATTGGCTG CCGGACAACG CCCCGTCCAT CTATTGGACA GCAGAGAATG CCGCTCACTT
  ACCTGGTTTT GATTGGTCTA AATGTGAAAC AATGCCCGCC CAGCTCTTTC AGAAGTTCCA
  GTTTTTGATT GGTCTTAGCG TCTGTCCATT CGCTCCGCCC TCGATGGAGA CTCCCAGCTC
  TGATTGGCTG AAGAAGCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369040082	MGP_WTSI_6_83781764	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258469013					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369040082	MGP_WTSI_6_83781764	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83808752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	within coordinates
Gm68055	predicted gene, 68055	within coordinates
Paip2b	poly(A) binding protein interacting protein 2B	29 bp upstream
Rr399726	regulatory region 399726	within coordinates
Rr632951	regulatory region 632951	487 bp distal
Rr632952	regulatory region 632952	40 bp distal
Rr632953	regulatory region 632953	326 bp distal
Rr632954	regulatory region 632954	within coordinates
Rr632955	regulatory region 632955	within coordinates
Tssr61712	transcription start site region 61712	68 bp upstream
Tssr61713	transcription start site region 61713	50 bp upstream
Tssr61714	transcription start site region 61714	20 bp upstream