rs258431286 SNP Detail

Summary

• ID
  rs258431286
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44073768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTTCAA TAGTCTGATA
  GATTGAGGTA CACAGACATC TCAAGAATAT CTGCTAGACT AATTGCAGAT CCAAGACCCA
  GGAAGGTGGG GAGCGGCCTG TGCTGCTAGC TCCTGATGAA GGTTGGTTTT GTTTTGTTTT
  TAAGATTTTA TTTTAGCTTA TTTTTATCAT GTATATGGGG TAGGGGGGTG GGGCAGAGGA
  K
  GTGTACACAT TAGAGTGCAC ATGTCAAAGT CCAGAAGAGG GTAACAGATA CCCTGGAGCT
  GAAGTTAGAG ATCGTGGTGA ACCTCCTGAC ATGGGTGACA TTTCCCACAG CTAGGTGCAA
  GAGAATGAGA AGCTAGACAG TATTCTGAAC AGCACAGCTG CACCTGTGTC TCAAACAACA
  ACAAAAAGTC ACAAGTGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100046	CHEV_4_44086640	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258431286					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44073768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	701 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1001 bp distal
Rr591150	regulatory region 591150	504 bp distal
Rr591151	regulatory region 591151	771 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1211 bp upstream
Tssr41483	transcription start site region 41483	1075 bp upstream
Tssr41484	transcription start site region 41484	1037 bp upstream
Tssr41485	transcription start site region 41485	747 bp upstream