rs258423892 SNP Detail

Summary

• ID
  rs258423892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAAGTG CCAACCGACT
  GTTGTAAGCT ATTGGAAAGC GCTTTTTCGG AGAAGCGATG TAAGGCTGAG CACTTAACTC
  AAGGGCAAAT GCAAGGCTCT CTCCTCAGAA CTTTCAGTAA GTTCAAAGGG CGAATTAGCT
  GAGAGGATGT TGGAAGAAAA GATGTGGCTG CTCTGGGAAG ACCGCAAAAC CACTGAAATG
  Y
  TCGAGCATGA AAGGGGGAAT ATTTTAATGA AAATTCAAAC CACTTCCAAG TTCAACGCCA
  CACGAGTCCA CATTATCTTT GGGCCTTTCT CCTAGCTTAG CGGCATGAAC TAAGCAGTTA
  AGAGTCTTAA GGTAAGCTGG CAGAAAGAGA TGAAAAAAAA AAATCCTCTG CTGGCGTACA
  TATTAAAATT AGCTTTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362654217	MGP_WTSI_4_102786226	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258423892					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362654217	MGP_WTSI_4_102786226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			276 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			769 bp upstream
Rr596355	regulatory region 596355			523 bp distal
Rr596356	regulatory region 596356			284 bp proximal
Rr596357	regulatory region 596357			785 bp proximal
Rr596358	regulatory region 596358			924 bp proximal
Tssr38082	transcription start site region 38082			764 bp upstream
Tssr38083	transcription start site region 38083			781 bp upstream
Tssr38084	transcription start site region 38084			841 bp upstream
Tssr38085	transcription start site region 38085			1091 bp upstream
Tssr38086	transcription start site region 38086			1155 bp upstream
Tssr38087	transcription start site region 38087			1295 bp upstream
Tssr42583	transcription start site region 42583			589 bp downstream
Tssr42584	transcription start site region 42584			601 bp downstream
Tssr42585	transcription start site region 42585			617 bp downstream
Tssr42586	transcription start site region 42586			684 bp downstream
Tssr42587	transcription start site region 42587			695 bp downstream
Tssr42588	transcription start site region 42588			736 bp downstream
Tssr42589	transcription start site region 42589			941 bp downstream
Tssr42590	transcription start site region 42590			1191 bp downstream