rs258414929 SNP Detail

Summary

• ID
  rs258414929
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96983177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATTCCAAA GTGAAAATTC AAGGGAGTAT
  TTTCAAAATG AAAAGTTTTA AAGTGTTTAT CTCCAAAACA GGGACATAAA TAGTCCTGTT
  GGTGCACAAG TCCGGGAAGG TGAAGATAGG TCTAACTAAA CAAAGttaaa aaaaaaaaaa
  T
  aaaatGTCTT CCCTACTCCC TGCCCAGCCC CAGTTTCTGG GGATAGCAAG GGATTTCTTC
  AGCAGGGAAG CCAGGCTCCT ACTTAGGTTA actgtgctaa gtactgagca taaagtactg
  tgctaagtac tgAGCATAAA GTGCTTTGAG                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322339981	CHEV_7_104482480	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258414929					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96983177 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	1578 bp downstream
Rr651402	regulatory region 651402	1961 bp distal
Rr651403	regulatory region 651403	1633 bp distal
Rr651404	regulatory region 651404	1637 bp distal
Rr651405	regulatory region 651405	165 bp distal
Tssr67964	transcription start site region 67964	1639 bp downstream
Tssr67965	transcription start site region 67965	1319 bp downstream
Tssr73573	transcription start site region 73573	1875 bp upstream
Tssr73574	transcription start site region 73574	1856 bp upstream
Tssr73575	transcription start site region 73575	1828 bp upstream
Usp35	ubiquitin specific peptidase 35	1950 bp upstream