rs258402042 SNP Detail

Summary

• ID
  rs258402042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68952834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGCCTA AGACTCACAG
  CAAGACTTGA CCTCGGAGAC AAGATGGAAA GAGGGGGCGT AGAGGAAGGA AAATGGATTG
  TGCCTTCAAG GAGTGTGCTT TACAGGTCCA TAGAGTGCCC GACCCTGCCA GAAAGTTCTG
  TAACCAAACA TGGGGAAGGG GCAGAGAAGA GGAGCCTTAG CACTAAGGCA GCTCCACGCT
  R
  ACCGGCAGCG CTACTCAGGA TTTATGAACT GTTATTCATG CGCTCTATAG ATGATAGTGT
  TGGTCTGGAA AAGAAAGACT AGAAATTACA ATTCAAATAC AGGCACCAAA GCGTAAAAGT
  CGTAAACCTA AAAACCTCAT GTGTTGGGGC GTCAGCCTTC GAAAACTTTG GGCTGAAAAA
  AAAAAATCAG CTGCTTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358314021	MGP_WTSI_3_68849423	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258402042					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358314021	MGP_WTSI_3_68849423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68952834 () rs orientation: forward

Symbol	Name	Function Class
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	757 bp distal
Rr578119	regulatory region 578119	369 bp distal
Rr578120	regulatory region 578120	598 bp distal
Rr578121	regulatory region 578121	within coordinates
Rr578122	regulatory region 578122	137 bp distal
Rr578123	regulatory region 578123	1007 bp proximal
Trim59	tripartite motif-containing 59	759 bp upstream
Tssr29529	transcription start site region 29529	414 bp downstream
Tssr29530	transcription start site region 29530	365 bp downstream
Tssr33523	transcription start site region 33523	842 bp upstream
Tssr33524	transcription start site region 33524	834 bp upstream
Tssr33525	transcription start site region 33525	738 bp upstream
Tssr33526	transcription start site region 33526	527 bp upstream
Tssr33527	transcription start site region 33527	502 bp upstream