rs258400679 SNP Detail

Summary

• ID
  rs258400679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102298946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTCCT GTTTATAAAA
  GAAAGACATT TGCTCTAAGA AAAGCTTGTA AAATAACAAT AAAGTATAAA AATCCTTTGT
  ATTTGATAAG AAATACAGAA AAAAACAAAC AAACAAAAAA ACCCCAAAAC ATATCTATGC
  ATGTGCTATA GGTATAATGA TGTCTTAGGA AATCCACTCT AGAAAAATAA GGGACTCCGA
  R
  GCCAAGCGGA ACATGAGGTT CACTTGTGGC TCTCCCTCTC TTCTCTACAC TTGCACAGTG
  TTCTTTCTCC ATAGCCCTTG GTACTCCAGG CCTTTTAATC CATGTGACAG AAAGCATAGC
  AGCATAGCAT TAGAATTTGT GACCTAGTTA TATATATAAA AAAAGCTTTC TTGTCATAGA
  TTTGGTTTTG GTTTGTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321233626	CHEV_4_102114354	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258400679					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102298946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596244	regulatory region 596244			1866 bp distal
Rr596245	regulatory region 596245			1314 bp distal