rs258387965 SNP Detail

Summary

• ID
  rs258387965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134878361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG CCCATGCTCA GGGCCAGGCT
  Y
  CCTAGATCCC CTCTGGTCCA GAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351026	CHEV_4_134706965	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258387965					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134878361 () rs orientation: forward

Symbol	Name	Function Class
Rr601932	regulatory region 601932	45 bp distal
Rr601933	regulatory region 601933	410 bp distal
Rr601934	regulatory region 601934	956 bp proximal
Runx3	runt related transcription factor 3	Intron
Tssr1337	transcription start site region 1337	1223 bp upstream
Tssr39602	transcription start site region 39602	1486 bp upstream
Tssr39603	transcription start site region 39603	1652 bp upstream
Tssr39604	transcription start site region 39604	1944 bp upstream