rs258381076 SNP Detail

Summary

• ID
  rs258381076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100730482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACCTTTC TCCTTTTGGA
  AGTTAATCAA TTTTTTTTTA ATCTTTTCTT TGTAATCTCT CTTTGCAGAC TTATTTCCTT
  GACCTTTCAG AGGGCAGAGG GCACATTCCC CTTGACCTCT ACAACAAACA GCCGGCAAGG
  TTGCTGTGTT CTGAATGCTG TAACAAGGAA GATGGGTCAG GCGGCAGATG CAGATGAAGT
  Y
  GTGGAGTCTC TAGGGGAGAG CCCAGTGGAG AGATGACGAC TCAGCAGCTG GCTGTAAGGA
  GCCAGAGCTC AAAGGACCTG AGCTGAGGAC ACAGGTGCTC AGGAGTCCAG ATACAGGGCA
  GCTGAAGCGG AGCAGAGCAG CAGCTGAGGG CACTCTAGGG ACATGGTGCT GTGGGAAGAG
  TGGCCAGAGG ACACAATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849653	CHEV_3_100627089	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258381076					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100730482 () rs orientation: forward

Symbol	Name	Function Class
Gm32720	predicted gene, 32720	within coordinates
Rr581912	regulatory region 581912	1500 bp distal
Rr581913	regulatory region 581913	1625 bp distal
Rr581914	regulatory region 581914	1489 bp distal