rs258367627 SNP Detail

Summary

• ID
  rs258367627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128126750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCCAGC CCCACAAGTC CTGCTGGAGC
  CAGCCCCACA AGTCCTGCTG GAGCCAGCCC CACAAGTCCT GCTGGAGCCA GCCCCACAAG
  TCCTGCTGGA GCCAGCCCCA CAAGTCCAGC TGGAGCCAGC CCCACAAGTC CTGCTGGAGC
  Y
  AGCCCCACAA GTCCTGCTGG AGCCAGCCCC ACAAGTCCTG CTGGAGCTAG CCCCACAAGT
  CCAGCTGGAG CCAGCACACT TGCTGCAGCA GCCATCAGAG TCAGATTTGC CTGAGGACCT
  GCAGCAGATT AGCGTGGAGG ATCTGAAAAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323532968	CHEV_10_127727937	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258367627					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128126750 () rs orientation: forward

Symbol	Name	Function Class
Stat2	signal transducer and activator of transcription 2	Coding-NonSynonymous
Tssr96388	transcription start site region 96388	1610 bp upstream