rs258360486 SNP Detail

Summary

• ID
  rs258360486
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132293209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTAGGT TTGTGGAAGG
  ATGAACTAAG AAGGTGGGGG ACGTGCTTTG CTGAGCATAA AACAGTAAGA ACAGGAGTGT
  CACTGTCAAT GCTGACAAGA GGAGCAATTG TTTGTGCGTT TATCGTCTCT TCTCCTAGCT
  AGCAGGGTTT GGCAGAAAAA CGTGCACAGG AATATGCACT GAGTTGGGAA TGGTGGGCAC
  G
  TCTGTGATCC CAGCACTCGA GAGGCAGAGG CAGTAAAGAT CAGGAGTTCA AGGTCAGCTT
  TAGCTATGTA GCAAGTTGAA GGCCAGCTTG GGCTACATGA GACCTCCACA ACATCTCCCA
  GATCTGTACT AAGTAGATGA AAAGATATCA TCAAAACTGT ACTTGTTAGG GGCGGACAGT
  GAGCCATAGG CCAGCTCTGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334515	CHEV_4_132121813	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258360486					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132293209 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1821 bp distal
Rr601016	regulatory region 601016	1601 bp distal
Rr601017	regulatory region 601017	1773 bp distal
Rr601018	regulatory region 601018	1618 bp distal
Rr601019	regulatory region 601019	386 bp distal
Rr601020	regulatory region 601020	1413 bp proximal
Tssr39386	transcription start site region 39386	1822 bp downstream
Tssr39387	transcription start site region 39387	1805 bp downstream
Tssr39388	transcription start site region 39388	1688 bp downstream
Tssr39389	transcription start site region 39389	530 bp downstream
Tssr43688	transcription start site region 43688	1566 bp downstream
Tssr43689	transcription start site region 43689	1593 bp downstream