rs258351788 SNP Detail

Summary

• ID
  rs258351788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161517186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCTCC AATACATTGT
  CCAAGTGCAT CATGGGATAC AGCTTTTTAA TTCTTTTCGA ACTATATCCA TGTTATTTCA
  TCAGGGCTGA GTCAAATAGC ACTTGGAAAC CTTTTGACTT ACTCTTTTGA ATACATCAGA
  CACATGTGTC CATATTTTTA GAGGGTGGGG CAGAGAAAAC AAAGATCTTT TATTAAAAAG
  R
  ATACAAAGAG AAAATTATCT AATATCCAAC CTCTCAAATA CAAACAGATA CATTTTAAAA
  ATACTGTTGT TTTGTATGGA AAGATAGTCT TTCCAAATTC TATTATATCC TCACAAGGGT
  CTCATTCTCA GAAATGGGAA TGCAGAGTCT GGGCATAAGG GCAAATAGCC ATTTGGGCTT
  TCTGCTCCAA GAGCACCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352152504	MGP_WTSI_1_163619748	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	G	G	A	A	A	G	G	G	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258351788					SNP	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	G	G	A	A	A	G	G	G	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352152504	MGP_WTSI_1_163619748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161517186 () rs orientation: forward

Symbol	Name	Function Class
Rr421818	regulatory region 421818	1623 bp distal
Rr421819	regulatory region 421819	1858 bp distal
Rr421820	regulatory region 421820	141 bp distal