rs258344691 SNP Detail

Summary

• ID
  rs258344691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5153593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATAATGTT AAGTTTGATA TGGTTAGCAA
  ATGAGTATTA GGTAAAATTT AAAacacata gacagaaaca cacacacaca cacacacaca
  cacacaGAGG ACTCCTTTCT TAGCATGTTT AGAGTGATTA GTCCTCAATA TGGGTTCCTG
  Y
  TACCTTGAAG AATTCACCTG CTACCTGTAC AAGATGAAGG TATAATGACT CCTTCAAAAA
  AATCAGGAAG GTGTTATTTA AAAGTTTTCG AATACTTATA ATTCTAACCA GCGGAGATAG
  GTAAATACTG TCATCAGTAG AACTGTAAGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320637649	CHEV_3_5088533	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258344691					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5153593 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	34 bp distal
Gm17308	predicted gene, 17308	1743 bp upstream
Rr573165	regulatory region 573165	278 bp proximal
Rr573166	regulatory region 573166	1169 bp proximal
Rr573167	regulatory region 573167	1428 bp proximal
Rr573168	regulatory region 573168	1754 bp proximal
Tssr28264	transcription start site region 28264	1735 bp upstream