rs258327176 SNP Detail

Summary

• ID
  rs258327176
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20561628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agtttcatg tggtctgtga attgtatctt
  gggtagtctg agattctggg ttaatatcta cttatcattg agtgcatacc ttatgtgttt
  ttttgtgatt gggttacctc actcagggtg atattttcta gttccatcca ttttcctaag
  W
  ctttcatgaa atcattgttt ttaatagctg agtagtactc cattgtgtaa atgtatcaca
  ttttctgtat ccattacact gttgaaggcc ttctgggttg tttccagctt ctggctattt
  taaataaggc tattataaat aaggatcata                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320680600	CHEV_3_20406386	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258327176					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20561628 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1258 bp upstream
Rr574081	regulatory region 574081	1795 bp proximal
Rr574082	regulatory region 574082	1924 bp proximal
Tssr32748	transcription start site region 32748	1254 bp upstream
Tssr32749	transcription start site region 32749	1239 bp upstream