rs258312548 SNP Detail

Summary

• ID
  rs258312548
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAAAA ACTGGTTAGG
  GAGCTCAAGA CAAACAGACT AGGACTTAAA AAACAAAAGA CTATCATGTT TACTTTCATG
  ATCCAATGAA AGGAAGTGAC TCAAGTGTCT GGGGTGGATC CTGTTCCTGC CTGAGGGGGG
  CTAGCCAGTG AACTAGACAA GTGACCCCCC ACTTAAAAAT CAGCTCTTAA AATAGACACT
  A
  AGTTGTCAGG TTACATAGAG CCAACAGCAC TAACCTGAAA AACAGGGTGC TGTTTACAGC
  TATTTAATAC AGGCTTACCA CTGTTGGGAA TCCGGGTTTC TGCATGCCAA TTTGGGTTGG
  GAAGAAAGTC AACACCGAAT TTACTTAGAG AAGAACTTAG AGCTAGCCTA ATTGTTCAAA
  TGGTACCCTT CAAACTCCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389269	CHEV_4_141276912	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258312548					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1735 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	1410 bp downstream
Rr603862	regulatory region 603862	882 bp distal
Rr603863	regulatory region 603863	within coordinates
Rr603864	regulatory region 603864	924 bp proximal