rs258295947 SNP Detail

Summary

• ID
  rs258295947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110253398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCAGAT TTGCAAATAT
  GGACCTCCGA GCCAGCTTTA CTTCTTTTAC TTACTCTGTT AACTGTAATC GAGGCATCTT
  GATATGTAGC TGTCCTCCCC TTTTACCTCC TCCAACTCCC TCCTCCCCTA CCCCCCCCCC
  AGCATCCTCA ACACGTCCCC TCCCCCACCT CATGTCTTCT CTGAGTCCTG TTAGCGCCAC
  Y
  GGTTGCAAAG CTGACTGATC TTGTGGACTT GTCCAGGGAA CCACATCTGC AAGTGAGTCC
  ACAGATGCAG AGGCCATACT ATGTTCAGAA GACAGTTTCA GAGCGCTCTA TCCTGTCCAT
  CCCTCTTCTG TGATGCCCCT GAGACTTGGG TGGGGCATGT GTGATACAGA TGACCCACTT
  AGGACTGAGC ACGTGGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902825	MGP_WTSI_9_110326834	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258295947					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902825	MGP_WTSI_9_110326834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110253398 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	1596 bp downstream
Ngp	neutrophilic granule protein	1318 bp downstream
Tssr3023	transcription start site region 3023	1948 bp upstream
Tssr3024	transcription start site region 3024	1930 bp upstream
Tssr3025	transcription start site region 3025	1841 bp upstream
Tssr3026	transcription start site region 3026	1792 bp upstream
Tssr3027	transcription start site region 3027	1695 bp upstream
Tssr3028	transcription start site region 3028	1629 bp upstream
Tssr3029	transcription start site region 3029	1613 bp upstream
Tssr3030	transcription start site region 3030	1602 bp upstream
Tssr3031	transcription start site region 3031	1410 bp upstream
Tssr87370	transcription start site region 87370	1984 bp downstream
Tssr87371	transcription start site region 87371	1956 bp downstream
Tssr87372	transcription start site region 87372	1886 bp downstream
Tssr87373	transcription start site region 87373	1846 bp downstream
Tssr87374	transcription start site region 87374	1824 bp downstream
Tssr87375	transcription start site region 87375	1801 bp downstream
Tssr87376	transcription start site region 87376	1795 bp downstream
Tssr87377	transcription start site region 87377	1781 bp downstream
Tssr87378	transcription start site region 87378	1730 bp downstream
Tssr87379	transcription start site region 87379	1685 bp downstream
Tssr87380	transcription start site region 87380	1468 bp downstream
Tssr91619	transcription start site region 91619	2000 bp upstream
Tssr91620	transcription start site region 91620	1896 bp upstream
Tssr91621	transcription start site region 91621	1817 bp upstream
Tssr91622	transcription start site region 91622	1755 bp upstream
Tssr91623	transcription start site region 91623	1320 bp upstream