rs258271724 SNP Detail

Summary

• ID
  rs258271724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63185479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGTACC TTTCTTGACC
  TCCTGCCCTT TGTTTCTTCT CCTATATAAC GTGCATTATC CTAGTACTTG CTTTGGGGGA
  TTGATTGATA ATGTAAGTAG CTTAACACTT AAGCAGTACT TAGAACACAG AAAGGCTTCC
  AGAAGTACTA ATCATAATAA TAGCTATTTT AATGTTTCTG TTACACGTCT GGTAGCATTG
  Y
  GCGTCGGAAC TTAGTAGGAG AGGGTGTTAC AGTTGACTAG TGATGTCTGC CTTGGCTAGT
  CATATCCTCC TTGGCTGAAG ATGCTACAGT TGACAGTGAT GTCTGTATTG GCTAGGGATG
  GGAAAGTATT AACTCAGACA CTCATCTCTT GTGTTCATTC AACAGAAATC TGCTGAGTAC
  TTACTTTGGC AATATGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321144847	CHEV_4_62928276	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258271724					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63185479 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col27a1	collagen, type XXVII, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr593508	regulatory region 593508			within coordinates
Rr593509	regulatory region 593509			1604 bp proximal