rs258248046 SNP Detail

Summary

• ID
  rs258248046
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87082180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCTCTT CCCTCCCCGG
  CTCCCTCCCT CTCTTCCTGA CGTCTGCTCT CCCTCCGACG GCGCCTCCCT CCACTGCCCT
  CCCCTGGTCC CCCAACGCGC GCGCACACAC TCGCTCCGCT CGCTGGAACC GAGATGGGAG
  GAGAGCAAAG AGAAAGGAAT TGAGGGCAGA GGCAAGGGGT GGGGAGGGGT GGGGAGAACG
  M
  GGCGTCGCAG GCTCTGGAGC AAGGACCGCT GGGTCCTGGC CCACCAGTGC TTGGTGCGAG
  ACCTACTTTT ACCCCCAGTG GTGTAACTGA GCCGGGCATG GGGTGGCAGC CAGGACTGAG
  GACGAACCTT CATCAATTTG GATGACTGTG TTAGGAGGGG TGTGCTTCTT ATGCGTCTGG
  GGGATGGGGG TGTAAAAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358770846	MGP_WTSI_3_86978795	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258248046					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358770846	MGP_WTSI_3_86978795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87082180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	within coordinates
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	126 bp upstream
Rr579455	regulatory region 579455	706 bp distal
Rr579456	regulatory region 579456	334 bp distal
Rr579457	regulatory region 579457	within coordinates
Rr579458	regulatory region 579458	866 bp proximal
Rr579459	regulatory region 579459	952 bp proximal
Tssr33927	transcription start site region 33927	388 bp upstream
Tssr33928	transcription start site region 33928	295 bp upstream
Tssr33929	transcription start site region 33929	218 bp upstream
Tssr33930	transcription start site region 33930	194 bp upstream