rs258243355 SNP Detail

Summary

• ID
  rs258243355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101227141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGATGAG AAGGAGGCCT
  CTCAGGATGG GCAAAAATCC TGAGCTGAGC CAGGAGTGAA CCTAGGCTTC CAGCACTGAG
  TCATGAAAGC TGGGAAAGGA CTGAGATAGC CCTTCTTCCC AAACCATGCT GAGTCATGAA
  AGCTGGGAAA GGACTGAGAT AGCCCTTCTT CCCAAACCAT GCACGCTATG AGAGGCGATT
  Y
  GCATCCCAGG GGCTAGAGAA GGCCACAGGG AGATCTGTAG TGTAGTGAGA AGGTAGTGTA
  GTGAGAAGGG CAAACAGGCA GGTGTGAGTG AGGCTGGAAG CCAGGACCAG TGTCATTAGA
  TTTCTCAGGG ATGTCCAAGA GCTGGACTCC CTATTGGTGG CAATAGCCAC CCAAATGCCA
  GCCACTCGTT ATGAAACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851835	CHEV_3_101123748	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258243355					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101227141 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	within coordinates
Rr582007	regulatory region 582007	1708 bp distal
Rr582008	regulatory region 582008	1415 bp distal
Rr582009	regulatory region 582009	1500 bp distal
Rr582010	regulatory region 582010	1098 bp distal