rs258241510 SNP Detail

Summary

• ID
  rs258241510
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTTATTA ATTAGTTTGT GTGAATAGAC TCAGAGCGTA
  TACTTTTCCA TGTATCCCCG CCACCCCTTA GTTCTGTTTG TTGGTCCTTC CCAGGAGAGG
  K
  TTAAGGCTCC TGAAAACAAA GCTTACAGTG TACCCAAGGA GGAAGCAAGG CACCTCCCCC
  CCCCCCCTCC CCGAGACAAA AGAGCAGACT CACAATGAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909876	CHEV_3_121946457	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258241510					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1678 bp proximal
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1660 bp upstream
Rr584261	regulatory region 584261	425 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	320 bp distal
Rr584264	regulatory region 584264	314 bp proximal
Rr584265	regulatory region 584265	1203 bp proximal
Rr584266	regulatory region 584266	1801 bp proximal
Rr584267	regulatory region 584267	1934 bp proximal
Tssr31477	transcription start site region 31477	410 bp downstream
Tssr31478	transcription start site region 31478	1937 bp upstream
Tssr35443	transcription start site region 35443	1680 bp downstream
Tssr35444	transcription start site region 35444	1763 bp downstream