rs258199447 SNP Detail

Summary

• ID
  rs258199447
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3423967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGATG TAATGTTTTT
  ACAGCATCAC AAAATTCCTC AAATCCCCAC CTCTACTATG ATGGTTCAAA AGTAATGCAA
  AAAAAAGAGT CTTTTACAGG ATCTCCTCCT GCCTCTCAAT CTCTCTCTCT CTGTCTCTCT
  TTCTCTCTTC CCCCGCTCCC ACTTTCATGC TGGGGACAGA ACCATGTGGA AGGCATGCAC
  W
  CTGCACTGAA TTATATCTTA ATCTTGTGGC TACTGTATTT GTGACACTTG CACACAATTT
  TTCTTTCCCT TTTCCCTCTG TCAGTCTGAA AAACATTTTA TATGTCCATG CAGCACAATG
  CATGCAGAAA GTACATGTTT ATTTAGTTCA AGGTGGCAAT GGTTTGGGTA AAAAAAGTAT
  TCCTAACACC TCCACACAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss367209615	MGP_WTSI_6_3373967	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs258199447					SNP	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367209615	MGP_WTSI_6_3373967	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3423967 () rs orientation: forward

Symbol	Name	Function Class
Rr378836	regulatory region 378836	395 bp upstream
Rr625969	regulatory region 625969	558 bp proximal