rs258199294 SNP Detail

Summary

• ID
  rs258199294
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58207950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTACATG AAAGGCAGAG
  CCCTTGCCTA AAAGATTCCA GCTAGGAATC AGGAACTCTG CGTAGTTATG TAAACCCCCA
  TCACCTCTGG GCTTTGGTCC AGTGTCTACT TTTATTTTGC CTTGGAATCA AATGACCCCA
  GAGTTCCGCT GCTCTCCAGC AGTGAGTGGT TTAACTCCAA CTCTATTTAA TCAACTACCT
  W
  CAACATGAGA GGTGTCAGAG CGTGCAGGCC CAAGTGGCAG GGCTCTTGGA TCAATTTCCC
  TGAAATGAAA CCCTGGCTGT GCTATTTATT GGCTGTGTCA GTTTGCTCAT TTGGAAAATG
  GAGGAATAAT AACATATCAA GGATTAAATC ATTAAATAGT AAAACTCTTA GGGATGTGTT
  CAGAACACAG CATGTGCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361664255	MGP_WTSI_4_58220822	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258199294					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361664255	MGP_WTSI_4_58220822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58207950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	1300 bp distal
Rr592872	regulatory region 592872	864 bp distal
Rr592873	regulatory region 592873	1287 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	1354 bp upstream
Tssr41870	transcription start site region 41870	1616 bp upstream
Tssr41871	transcription start site region 41871	1591 bp upstream
Tssr41872	transcription start site region 41872	1430 bp upstream
Tssr41873	transcription start site region 41873	1406 bp upstream
Tssr41874	transcription start site region 41874	1375 bp upstream
Tssr41875	transcription start site region 41875	1363 bp upstream
Tssr41876	transcription start site region 41876	1334 bp upstream
Tssr41877	transcription start site region 41877	1302 bp upstream
Tssr41878	transcription start site region 41878	1277 bp upstream
Tssr41879	transcription start site region 41879	1253 bp upstream
Tssr41880	transcription start site region 41880	1160 bp upstream