rs258166242 SNP Detail

Summary

• ID
  rs258166242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135899280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTGCCAA TTAAAGCCTG GAGGAACAGG
  TTCCTGGGTT TCATTTGAAG AGAAAGAGGA CATATTGGtt atattaatta atatattaat
  aaatGATTTA ACCTAACTAA GCAACAAAGC GAAAACAAAA GGTTTTGTGG CCAGGGAAAT
  R
  CACTTGAGGG TCAAGACTCA GGTCCCGACT CTGACTCTCT TTCAATGTTT GGCCCCACCC
  CCAAGGAAAA GAGGTCCGCT CCTCAGCGCT CTTCGCTGTA CTGTTGGTCC TTATGCTGGG
  TGTTCCAGAT GCACCTCCTG CCTCAGTTTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354361	CHEV_4_135727884	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258166242					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135899280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	within coordinates
E2f2	E2F transcription factor 2	425 bp upstream
Rr367754	regulatory region 367754	99 bp upstream
Rr602302	regulatory region 602302	within coordinates
Tssr39670	transcription start site region 39670	297 bp upstream
Tssr39671	transcription start site region 39671	398 bp upstream
Tssr39672	transcription start site region 39672	427 bp upstream
Tssr39673	transcription start site region 39673	459 bp upstream
Tssr39674	transcription start site region 39674	589 bp upstream
Tssr39675	transcription start site region 39675	697 bp upstream
Tssr39676	transcription start site region 39676	881 bp upstream
Tssr39677	transcription start site region 39677	976 bp upstream
Tssr39678	transcription start site region 39678	1198 bp upstream
Tssr44029	transcription start site region 44029	349 bp downstream
Tssr44030	transcription start site region 44030	632 bp downstream
Tssr44031	transcription start site region 44031	1069 bp downstream