rs258126639 SNP Detail

Summary

• ID
  rs258126639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82961354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTCATGT TTGCTTAAAG
  AAAGTGTCCT CTGCACACTT ATGAAGAGCC ATAGTGACCT CTACTGTCCA GAAAAGGCAG
  CTCGCAAGGT TAGCCAGAGC AGGTTTTTGC TTACTTTTAA AGACACGTAC ATCTTATTCT
  TTTCGTTTGT TTTGGTTTTA TTCTCTGTGT AGTTCTGGCC CTGGCTATCC TGGAACTCAG
  R
  GATCCGACTG CCTCTGCCTC CTCAGTACTG GGATTAAAGG CGTGCGCCAA CACCTCTGAA
  CTGGGACTCC TAACCAGCCA AAGATCCTGG ATCCCTTCAA ATACAAGAAA ATAGGAGGGA
  GGCCATAGCA AACAGAAAAA CCCAGGTTCC TATATGAACA GGAGATCTGT GTATGATATG
  TGTGATTTAT GGGTCTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358677264	MGP_WTSI_3_82857969	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258126639					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358677264	MGP_WTSI_3_82857969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82961354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	998 bp proximal
Plrg1	pleiotropic regulator 1	1491 bp upstream
Rr397732	regulatory region 397732	1202 bp upstream
Rr578826	regulatory region 578826	within coordinates
Rr578827	regulatory region 578827	129 bp distal
Rr578828	regulatory region 578828	985 bp proximal
Rr578829	regulatory region 578829	1394 bp proximal
Rr578830	regulatory region 578830	1519 bp proximal
Tssr29713	transcription start site region 29713	1469 bp upstream
Tssr29714	transcription start site region 29714	1528 bp upstream
Tssr29715	transcription start site region 29715	1547 bp upstream