rs258123140 SNP Detail

Summary

• ID
  rs258123140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119495756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATGCCC AGCTTGAAAT
  GCTCTTCTTC TTCTTTTTTT AATAGTTTAA TGTATTTTAA TAGCAAACTT ACAGGAACAG
  CACACAAGAC TGACAACATT AAAAACATGT ACTTGTATGT AGGACAACTC AGTTAGAAAA
  GTATAGTGAA TGGATGGAAT CTACTGTGTG ATAAAAATGC TACAAACACC ATTTAGTTGC
  Y
  GTCAATAAGA AATTTACTTA TTTTTAAAAA ATCCAAATGC TGGCATTGTC CAGAAAATTT
  TAACAGGTTT ATTTATAATT GTTATAAAGT TGAACTCTTG AAATGTGTTC ACTGAAACAT
  TTTGCTTCCA TTAATGCTTT ACATCTTGCA TTTATATTAA AAATTCACAC ACAAATGAAC
  ATGGAGAAAC GCCAATACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss355434374	MGP_WTSI_2_119491011	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	T	T	T	T	T	T	C	T	C	T	C	C	T	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs258123140					SNP	C	T	C	C	C	T	T	T	T	T	T	C	T	C	T	C	C	T	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355434374	MGP_WTSI_2_119491011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119495756 () rs orientation: forward

Symbol	Name	Function Class
Gm75025	predicted gene, 75025	within coordinates
Gm75032	predicted gene, 75032	within coordinates
H3f3c	H3 histone, family 3C	mRNA-UTR
Rr563558	regulatory region 563558	1964 bp distal
Rr563559	regulatory region 563559	657 bp proximal
Tssr25826	transcription start site region 25826	875 bp downstream