rs258107008 SNP Detail

Summary

• ID
  rs258107008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115676223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagacacac cagaagaggg catccgatcc
  cattacagat ggttgtgagc caccatgtga ttactgggaa ttgaactcag gacctctgga
  acagcactca gcgctcttaa ttactgagcc atctctccag ctgccctaca gtgttttttt
  Y
  tttttaagat ttattgattt attatatgta agtacactgt agctgtcttc agacacccca
  gaagagggta ttagacctca ttatggatgg ttgcgagcca tcatgtggtt gctgggattt
  gaactcacaa ccttcagact cacaaccttc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916400	CHEV_6_115649280	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258107008					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115676223 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	93 bp downstream
Rr637027	regulatory region 637027	869 bp distal
Rr637028	regulatory region 637028	269 bp distal
Rr637029	regulatory region 637029	358 bp distal
Rr637030	regulatory region 637030	124 bp distal
Rr637031	regulatory region 637031	1574 bp proximal