rs258106863 SNP Detail

Summary

• ID
  rs258106863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89046602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAAGT GTCTCACACT
  AGCTCGGAGG ACTCACCCTA GTCTCACAGA TGAAGGAACA AATGTGATGG CATGCCATAG
  CCAATAGAGG GCACCCGAGA CCCCAGTCCC AGCCCAGGCG CAGGGATCAG ATTTCCACAG
  GCAGCAGTGA GTCAAATCCA ATCCAAAGTT CACTCCCTAG TACCCAGTCA TTCTTCAACA
  Y
  TGCATCTCTT TCCTTAGCGT CTTTCAGTTG GCAATCAAAT GCAAGCCTAA GCAAGAGCCT
  TCTCCGCAGT GATTTTATGA GGATAGTAGA GTTGAAGACT AACTCCAGTT AGCCTTCCTG
  ATCCACAGCG CCTGATTCAG ACTTGGAAAA AACAGGCATG AGAGGCCTGA CCCTCTGATA
  ACCCCGCTAG GCAGTTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362340676	MGP_WTSI_4_88774269	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258106863					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362340676	MGP_WTSI_4_88774269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89046602 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	139 bp upstream
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	906 bp upstream
Rr595153	regulatory region 595153	174 bp distal
Rr595154	regulatory region 595154	within coordinates
Rr595155	regulatory region 595155	103 bp distal
Rr595156	regulatory region 595156	222 bp proximal
Rr595157	regulatory region 595157	838 bp proximal
Rr595158	regulatory region 595158	1052 bp proximal
Rr595159	regulatory region 595159	1312 bp proximal
Tssr42402	transcription start site region 42402	1809 bp upstream
Tssr42403	transcription start site region 42403	128 bp upstream