rs258043787 SNP Detail

Summary

• ID
  rs258043787
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148268051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAGACA GAAAATCAGA
  GATAGAGTGA TAGACAGAGA CAGAAACACA GAGACACAGA GAGACACAGA CACACACACA
  CACACAGACA CACACACACA CACAGACACA CACACACACA CACACACAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGTGCGA GAGAGCGAGC
  A
  CACAGTGCCT GTGGAGGCCA TAGAGGACAG ATCCCTTGGA GCAGGAGTTA TAGGCAGCTG
  AGAACTACCC AACGTGGGTT CTCTAGAATA GCTGCCAAGC CTGGAAGGTC CTTATAATTC
  TGTTTGTTTG AGATCGTATT TCCTGTGTAA TTCTGGTCTA GAACTTGATA TGGATCAGGC
  CGGCCCTGAA CTCATTGATC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	FVB/NJ	I/LnJ
ss363609784	MGP_WTSI_4_147557703	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	FVB/NJ	I/LnJ
rs258043787					SNP	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363609784	MGP_WTSI_4_147557703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148268051 () rs orientation: forward

Symbol	Name	Function Class
Gm68601	predicted gene, 68601	within coordinates
Rr604623	regulatory region 604623	562 bp distal
Rr604624	regulatory region 604624	777 bp proximal