rs258031057 SNP Detail

Summary

• ID
  rs258031057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117738919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT CAGACTAGGA CAGGTGATGA
  R
  CCCCACCTGC TTCCGACTTG GCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280666	CHEV_4_117554327	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258031057					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117738919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			Intron
				Noncoding-Transcript-Variant
Cpgi14670	CpG island 14670			975 bp proximal
Gm12841	predicted gene 12841			1828 bp upstream
Rr598245	regulatory region 598245			488 bp proximal
Rr598246	regulatory region 598246			1281 bp proximal
Rr598247	regulatory region 598247			1380 bp proximal
Rr598248	regulatory region 598248			1496 bp proximal
Rr598249	regulatory region 598249			1863 bp proximal
Tssr38640	transcription start site region 38640			1820 bp upstream
Tssr38641	transcription start site region 38641			1875 bp upstream
Tssr43002	transcription start site region 43002			1706 bp downstream