rs257999189 SNP Detail

Summary

• ID
  rs257999189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19364777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTTTGC ACACTAGTTC
  CTGACACCTA GGCCCCTTCC CTACAAAGCA GCAGTTCGCA GTTCGGGTGA GGACCACAAT
  GGGACCACTA GGCCTATTGT TCTGAGAAAC TCAGCACCCG CAGCGCTGCA AGGCTCGAGA
  ACCTGCACAG GTGTGGGGGA GGGCTAGGGG GTGGGGGGCG AAAAGGTGAG CTCAGGGTCA
  Y
  GACTAAGGGG ACAAGAGGCC CAACTGGTAG GAGACACAGA GAAAGGAGGG GAGGATAAAG
  TCATGGCTTG GGGCTACCAG CGGGCGTGAC GGGTTAGCCG CGGCGAGGGT CGCAGAGGCC
  AGGGGCACCG AGCACAGCCG AGGGTGAAAG ACTCCGGGAA GGGGAGGCCA GCCTACCGAG
  GCGGGAACAA TGGCCCGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678393	CHEV_3_19210613	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257999189					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19364777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110037C07Rik	RIKEN cDNA 3110037C07 gene			269 bp upstream
Cpgi13002	CpG island 13002			within coordinates
Gm66414	predicted gene, 66414			1024 bp upstream
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573969	regulatory region 573969			within coordinates
Rr573970	regulatory region 573970			699 bp proximal
Rr573971	regulatory region 573971			1035 bp proximal
Tssr28510	transcription start site region 28510			79 bp upstream
Tssr28511	transcription start site region 28511			235 bp upstream
Tssr28512	transcription start site region 28512			827 bp upstream
Tssr28513	transcription start site region 28513			868 bp upstream
Tssr32696	transcription start site region 32696			630 bp downstream
Tssr32697	transcription start site region 32697			656 bp downstream
Tssr32698	transcription start site region 32698			720 bp downstream
Tssr32699	transcription start site region 32699			736 bp downstream
Tssr32700	transcription start site region 32700			776 bp downstream
Tssr32701	transcription start site region 32701			1579 bp downstream