rs257970699 SNP Detail

Summary

• ID
  rs257970699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGAGTTA GAAGCAGGCT
  GGATAAAAGG CAATGCCTGC TTCAGCCAGA GCCTCAGCAG ACTGCGGGAG GCTGGGTGGC
  TGGCACAGAC TCTCCCTTAG TCAGGTGCTT GGACAGAAAC GGGCCTCAGT CTGGCTGGTC
  TCCCAGAAGA TAAAACAACA GCTGAGCAAT GGGCCAGTGT TTCTGGCTAA GGGTCCCCCT
  Y
  CCCCCAATTT TCTACAATCC TACTCCCAAT GATTCATCCC CGTTCTGTGA CTACAAGCTT
  GGCCAAGCCA CCTTTCTTTT TTATTTTTTA AAGAATTATT TATTTCTTTT ATGTATAATA
  GTACACGGTA GCTATCTTCA GACACACCAG CAGAGGGCAT TGTAGATGGT TGTGAGCCAT
  CATGTGGTTG CTGGGAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433831	CHEV_2_101878951	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257970699					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869139 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	618 bp upstream
Rr561615	regulatory region 561615	1145 bp distal
Rr561616	regulatory region 561616	1739 bp distal
Rr561617	regulatory region 561617	143 bp proximal
Rr561618	regulatory region 561618	255 bp proximal
Rr561619	regulatory region 561619	846 bp proximal
Tssr19089	transcription start site region 19089	801 bp upstream
Tssr19090	transcription start site region 19090	822 bp upstream
Tssr19091	transcription start site region 19091	852 bp upstream