rs257956896 SNP Detail

Summary

• ID
  rs257956896
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151945818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCATTCA AAAGCAGAAT
  AACAGGGAAA GTTAGGTTCA GCACCTACAG CCACCCTTGC CCAGGAAAGA GCAGGGGCCT
  GGGTCTCCAC ACCCAAAGGG ATGCAGGATG GCTGGCTATT CTGGGTCCTC AGCAGGAACG
  TTCCCTGCTA CCGGAGTTTA CCTGATACCC CTCATTGGTG TCTCCTTTCT CTAGCACCTA
  S
  AGGGGTCACC TCTGCTCTGT TCCTAACAGA GTTTACAACA GGTTCAAGCC CCAGGCTCTT
  TTAGAATCTT ACTGTCCCCT TCCCTTAGAG CCTGGGGAAA AATTTTAATT TTAATTTTAA
  TTTAAAAATA TTTTAAGGGG GAAAAAAATC ACTGTCCCTA GACTCAGTAT GCAAAGACAA
  AGAGCTTTTA TTCTGCAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144603	MGP_WTSI_2_151929634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257956896					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144603	MGP_WTSI_2_151929634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151945818 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	779 bp downstream
Cpgi12438	CpG island 12438	1110 bp proximal
Gm31475	predicted gene, 31475	734 bp upstream
Rr567286	regulatory region 567286	905 bp distal
Rr567287	regulatory region 567287	785 bp proximal
Rr567288	regulatory region 567288	1548 bp proximal
Rr567289	regulatory region 567289	1610 bp proximal
Rr567290	regulatory region 567290	1762 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	1618 bp upstream
Tssr20767	transcription start site region 20767	904 bp upstream
Tssr20768	transcription start site region 20768	1016 bp upstream
Tssr20769	transcription start site region 20769	1824 bp upstream
Tssr26780	transcription start site region 26780	1469 bp downstream