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rs257873206 SNP Detail
Summary
  • ID
    rs257873206
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:82938721 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCACGAACC CTGGACCTGG
TGGATCTGGG TATTGGCGTC CTGGGAACTC CGGGTCTGGA AGTGATGGAA ATCGGAACCC
TGGGACCACG GGGTCTGATG GCACTGGAGA CTGGGGTACC GGAAGCCCTA GACCTGGCTC
AGACTCTGGG AACTTTAGGC CTGCCAACCC TAACTGGGGT GTGTTTTCAG AGTTTGGAGA
S
AGTAGCAGCC CAGCCACAAG AAAAGAGTAT CACACAGGTA AAGCGGTCAC TTCTAAAGGA
GATAAAGAGC TCCTGATTGG AAAGGAGAAA GTCACCTCTT CTGGCACAAG CACCACACAT
CGTTCATGCT CTAAAACCAT TACCAAGACT GTCACAGGTC CTGATGGTCG CCGAGAAGTG
GTCAAAGAAG TGATCACCTC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358676703 MGP_WTSI_3_82835336 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257873206 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358676703 MGP_WTSI_3_82835336 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:82938721 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Fga fibrinogen alpha chain Coding-NonSynonymous
Rr375250 regulatory region 375250 within coordinates
Tssr917 transcription start site region 917 284 bp upstream
Tssr29668 transcription start site region 29668 1205 bp downstream
Tssr29669 transcription start site region 29669 1155 bp downstream
Tssr29670 transcription start site region 29670 1118 bp downstream
Tssr29671 transcription start site region 29671 569 bp downstream
Tssr29672 transcription start site region 29672 476 bp downstream
Tssr29673 transcription start site region 29673 429 bp downstream
Tssr29674 transcription start site region 29674 395 bp downstream
Tssr29675 transcription start site region 29675 389 bp downstream
Tssr29676 transcription start site region 29676 375 bp downstream
Tssr29677 transcription start site region 29677 360 bp downstream
Tssr29678 transcription start site region 29678 285 bp downstream
Tssr29679 transcription start site region 29679 226 bp downstream
Tssr29680 transcription start site region 29680 202 bp downstream
Tssr29681 transcription start site region 29681 100 bp downstream
Tssr29682 transcription start site region 29682 69 bp downstream
Tssr29683 transcription start site region 29683 38 bp downstream
Tssr29684 transcription start site region 29684 within coordinates
Tssr29685 transcription start site region 29685 13 bp upstream
Tssr29686 transcription start site region 29686 79 bp upstream
Tssr29687 transcription start site region 29687 177 bp upstream
Tssr29688 transcription start site region 29688 201 bp upstream
Tssr29689 transcription start site region 29689 227 bp upstream
Tssr29690 transcription start site region 29690 257 bp upstream
Tssr29691 transcription start site region 29691 303 bp upstream
Tssr29692 transcription start site region 29692 319 bp upstream
Tssr29693 transcription start site region 29693 350 bp upstream
Tssr29694 transcription start site region 29694 383 bp upstream
Tssr29695 transcription start site region 29695 409 bp upstream
Tssr29696 transcription start site region 29696 422 bp upstream
Tssr29697 transcription start site region 29697 446 bp upstream
Tssr29698 transcription start site region 29698 583 bp upstream
Tssr29699 transcription start site region 29699 665 bp upstream
Tssr29700 transcription start site region 29700 678 bp upstream
Tssr29701 transcription start site region 29701 710 bp upstream
Tssr33800 transcription start site region 33800 291 bp upstream
Tssr33801 transcription start site region 33801 33 bp downstream
Tssr33802 transcription start site region 33802 169 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/30/2025
MGI 6.24 		The Jackson Laboratory