rs257845690 SNP Detail

Summary

• ID
  rs257845690
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137721993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGGCTC GGTAGCCTCT
  CTAATTATTA TTTAGGATTC ATAGCAAAGT TTATTGCTAA ATTTTCTGTT GGAAACGAAT
  CAGCTCATTC CTGAGGTAAG TTGGGTCTTC AGTCTTTACT GCAAGTGTAC AAAAAGCACC
  CCCCCCCGCT AGTGTTTTGT TTTATTTTAT TTTATCGTAT TTTATTTTTT TAAGCAATTA
  K
  AGTTGTGTTG TGGCTTGTGG TGGAGCCGGC TAAGGAGGAA ATGTTACACT GGGCGCTTCC
  CTGTCTTTGA CCTTTCTAAA GGAAGAGGAA GTTAACTCAC ATTACCCAGT ACCCCCAGAA
  GTCTCACTTC TTCTAAGACT GGTGTTAACG CTGTATATCT TTTTTAAAGG GCTTTAGTAA
  GTTTGCTGCT CCGTAGGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363429332	MGP_WTSI_4_137550597	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257845690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363429332	MGP_WTSI_4_137550597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137721993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BE691133	expressed sequence BE691133			1322 bp upstream
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Gm70263	predicted gene, 70263			within coordinates
Rr398623	regulatory region 398623			1084 bp downstream
Rr602812	regulatory region 602812			1650 bp distal
Rr602813	regulatory region 602813			1333 bp distal
Rr602814	regulatory region 602814			1216 bp distal
Rr602815	regulatory region 602815			35 bp proximal
Rr602816	regulatory region 602816			556 bp proximal
Tssr39803	transcription start site region 39803			1646 bp downstream
Tssr39804	transcription start site region 39804			1607 bp downstream
Tssr39805	transcription start site region 39805			1208 bp downstream
Tssr39806	transcription start site region 39806			1178 bp downstream
Tssr39807	transcription start site region 39807			949 bp downstream
Tssr39808	transcription start site region 39808			749 bp downstream
Tssr39809	transcription start site region 39809			576 bp downstream
Tssr39810	transcription start site region 39810			89 bp upstream
Tssr39811	transcription start site region 39811			1146 bp upstream
Tssr44154	transcription start site region 44154			1378 bp upstream
Tssr44155	transcription start site region 44155			30 bp downstream