rs257810525 SNP Detail

Summary

• ID
  rs257810525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCGGATT CCTTGTCACG
  TTAGGACAGT GTGACTAATA CCAGTGGATG ACTCTCCTGT GGAACAATCT GATTAAACTG
  AAAACTTGCA GATTATACAT CCAGAGAAAA AACCATAATA GAGTAAAGAA TAAAGTGTAG
  AAATACTTAT AAGCAATTTC CTTTTTCTTT TTTTATTTAT TTGTTTTTAG ATTTTAGAAG
  Y
  AAATCAGACT GCAGCTATTT GCATACCTTT CTTTTTCCGT TTCAGACTTT GATAACACTT
  ATGGGCAAGT GTCAGAAGAC CTGAGGCGCA GAATTGAGAT CCTGAGGCGA AAAGTCATAG
  AGAAAGCGCA ACAGATTCAA GCTCTGCAGA GCAATGTCCG GGCTCAGTTG ATAGACATGA
  AGCGCCTGGA GGTAAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676680	MGP_WTSI_3_82834061	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257810525					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676680	MGP_WTSI_3_82834061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937446 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1559 bp upstream
Tssr29661	transcription start site region 29661	1591 bp downstream
Tssr29662	transcription start site region 29662	1542 bp downstream
Tssr29663	transcription start site region 29663	1525 bp downstream
Tssr29664	transcription start site region 29664	1042 bp downstream
Tssr29665	transcription start site region 29665	1003 bp downstream
Tssr29666	transcription start site region 29666	967 bp downstream
Tssr29667	transcription start site region 29667	924 bp downstream
Tssr29668	transcription start site region 29668	59 bp upstream
Tssr29669	transcription start site region 29669	103 bp upstream
Tssr29670	transcription start site region 29670	147 bp upstream
Tssr29671	transcription start site region 29671	691 bp upstream
Tssr29672	transcription start site region 29672	794 bp upstream
Tssr29673	transcription start site region 29673	822 bp upstream
Tssr29674	transcription start site region 29674	871 bp upstream
Tssr29675	transcription start site region 29675	881 bp upstream
Tssr29676	transcription start site region 29676	891 bp upstream
Tssr29677	transcription start site region 29677	908 bp upstream
Tssr29678	transcription start site region 29678	987 bp upstream
Tssr29679	transcription start site region 29679	1031 bp upstream
Tssr29680	transcription start site region 29680	1054 bp upstream
Tssr29681	transcription start site region 29681	1156 bp upstream
Tssr29682	transcription start site region 29682	1179 bp upstream
Tssr29683	transcription start site region 29683	1222 bp upstream
Tssr29684	transcription start site region 29684	1247 bp upstream
Tssr29685	transcription start site region 29685	1288 bp upstream
Tssr29686	transcription start site region 29686	1354 bp upstream
Tssr29687	transcription start site region 29687	1452 bp upstream
Tssr29688	transcription start site region 29688	1476 bp upstream
Tssr29689	transcription start site region 29689	1502 bp upstream
Tssr29690	transcription start site region 29690	1532 bp upstream
Tssr29691	transcription start site region 29691	1578 bp upstream
Tssr29692	transcription start site region 29692	1594 bp upstream
Tssr29693	transcription start site region 29693	1625 bp upstream
Tssr29694	transcription start site region 29694	1658 bp upstream
Tssr29695	transcription start site region 29695	1684 bp upstream
Tssr29696	transcription start site region 29696	1697 bp upstream
Tssr29697	transcription start site region 29697	1721 bp upstream
Tssr29698	transcription start site region 29698	1858 bp upstream
Tssr29699	transcription start site region 29699	1940 bp upstream
Tssr29700	transcription start site region 29700	1953 bp upstream
Tssr29701	transcription start site region 29701	1985 bp upstream
Tssr33800	transcription start site region 33800	963 bp downstream
Tssr33801	transcription start site region 33801	1308 bp downstream
Tssr33802	transcription start site region 33802	1444 bp downstream