rs257776434 SNP Detail

Summary

• ID
  rs257776434
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152055311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCTTTT TATTCTGAAA
  CTAGCCTCAC TGTGGTATCT TTACCTCCAG AGGGCAGAGG GCAGAGGGCA GAGGGCAGGG
  GCAGAGGGCA GGGGCAGAGG GCAGAGGGCA GAGGGCAGGG GCAGAGCAGC AGATCGTGAA
  CTCACTTTGT AGCCTTGAAT TTGTTACTTT TTTTCCTTTC CTTTTTTTTT TTTTTTTTTT
  C
  TTTTTGGTTA TTTTGATGGA GTCTCATAAA GGCAAGGCAG AAACTTGCTG TGTAGCCCAG
  GCTAGCCTGG AACTTGCTGT GTAGCCCAGG CTAGCCTGGA ACTTGTGATC CTTCTCTCTC
  CACTTCTGAA TAGCTGGGAT TATTGGCTTG GACCACCAGT TCTGGCAGAT GGAGTCTTTT
  TGCTTGTTTG TTTTTAATAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SWR/J
ss360264614	MGP_WTSI_3_152012638	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SWR/J
rs257776434					SNP	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264614	MGP_WTSI_3_152012638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152055311 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	934 bp proximal
Tssr32407	transcription start site region 32407	1100 bp downstream
Tssr32408	transcription start site region 32408	330 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron