rs257775890 SNP Detail

Summary

• ID
  rs257775890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72594193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTGCT GCGTCGCCTT
  CGCTGCTTAT GATGTAGGGT CGTGGGGCCG GGCGCCTCTT TGTCGCATCC TCTGCTCGTG
  TTTCCAACCT CTCCGTTGCC GATGCTGCTT TCTCACTTCA CAAACAAATG TACTCTCTTC
  AGCACTTGCC CATCTAGAAG CAAACACATT TCATCCTGAT CCTAATCCCT TTCTTGGCTG
  W
  ATCCAGGGCC CTCTGAATTT ACCAAGGTTT TTGATTTCTT GTTTGTTCTT CTGAATTTCT
  ATGTGTTTGA AACCATATTG CTATGTGGGC ACCTGCTGCC TCCTGAGTGT TTGGGATTAC
  AGGTGCCTCA CCACGCCCCT GTTGGGCTAT TTATTTATTT AAGAAATAAA ATATCAAAGA
  TTTACTATTT TTATTTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368753316	MGP_WTSI_6_72567204	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257775890					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368753316	MGP_WTSI_6_72567204	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72594193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	15 bp distal
Gm20536	predicted gene 20536	1020 bp downstream
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	267 bp downstream
Rr632243	regulatory region 632243	1714 bp distal
Rr632244	regulatory region 632244	383 bp distal
Rr632245	regulatory region 632245	453 bp distal
Rr632246	regulatory region 632246	221 bp distal
Rr632247	regulatory region 632247	within coordinates
Tgoln1	trans-golgi network protein	210 bp upstream
Tssr57152	transcription start site region 57152	292 bp downstream
Tssr61478	transcription start site region 61478	454 bp upstream