rs257770965 SNP Detail

Summary

• ID
  rs257770965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:27680874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGGGAG AGGCCTTCGG
  AATTAACTTG TCCAGCATGC ATTTCACGAA TGGTTGATGT CTTGAATAAC TCCTACCCAG
  ACACTCTAGG GTGGACTGAC GTCCAGACCT CGTGTCCTGA ACAGTGTTGC TTCCACTACA
  CAACACAGTG CTGTGTCAGA AGCTCCTACT AGGACGGAGA GCAGCAATTA GGAACATTCC
  Y
  GGTGTCCAAC AACCCCATTT ACACACTGAA AGCAAGAACA CACACAGCTT AGATTCACTA
  CTAGGCTCAC ATTCCTTGAG TGGTAGATGG TGAAACACAG GATCCAGCGT GTGGCCCAAC
  AAAACCTAGA GAAACTGAAC CACGGACACA GCTGTGGGAC CGGAAGAAAG ACATTTCATC
  TCTAAGGTCT TTGGAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393437290	MGP_WTSI_15_27610543	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257770965					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393437290	MGP_WTSI_15_27610543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:27680874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C130098B18Rik	RIKEN cDNA C130098B18 gene			705 bp upstream
Gm62492	predicted gene, 62492			897 bp upstream
Otulinl	OTU deubiquitinase with linear linkage specificity like			Intron
				Noncoding-Transcript-Variant
Rr390488	regulatory region 390488			1043 bp downstream
Rr500168	regulatory region 500168			within coordinates
Rr500169	regulatory region 500169			714 bp proximal
Rr500170	regulatory region 500170			908 bp proximal
Rr500171	regulatory region 500171			1764 bp proximal
Tssr130895	transcription start site region 130895			876 bp upstream
Tssr133874	transcription start site region 133874			630 bp upstream
Tssr133875	transcription start site region 133875			696 bp downstream
Tssr133876	transcription start site region 133876			710 bp downstream
Tssr133877	transcription start site region 133877			785 bp downstream