rs257759186 SNP Detail

Summary

• ID
  rs257759186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129897535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGTCAG ATCCCTCGGA
  ACTGAGTTAC AGGTTAGTGT GAGCTGGCAT GGCTGCTGGA AATTGAACCC GGTTCCTCTG
  TCTCTCCAAA CTTTTTGGTT TTTGGAAACA ACGTCTCAAA ACTCAGCCGG CCTCAAACAC
  TGTACACACC TTCCTCAGCC TCCCAAATGG TGGAATAGTT ACGAGTCACC AAACCAAGCT
  Y
  CTCTCTCTCT CTCTCTCTCA TTCGTTCCAA GTTGTCATAT GGTTTTTAAA AGTCTTAGCA
  CTTTTTACAA CATTCCTTGA ATGTTTCTTT TTTTATGGTA TCTTTCTTTT GTTTCATGGT
  GGAATACGGT TTTTCTTTGT CATCTTGATC ATATATAATG ATACTTTTTG AGGTCTTTCT
  CTCCTTGCTT ACTATTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss359704621	MGP_WTSI_3_129806804	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs257759186					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359704621	MGP_WTSI_3_129806804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129897535 () rs orientation: forward

Symbol	Name	Function Class
Rr585133	regulatory region 585133	507 bp distal
Rr585134	regulatory region 585134	110 bp distal
Rr585135	regulatory region 585135	190 bp distal