rs257754421 SNP Detail

Summary

• ID
  rs257754421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116760589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCTGAAG CCTCAGTGAA
  AATTCCTTGG CTTTCTGAAT AACTCTCAGC CGCCATCTAC TTGGACCATG CCCTAGTTCA
  CTAAATGCTC TAAGCTGCAA ACCACACTTA GCAAGACCTT AAAATAAGAT GTTCCCCAGT
  TCAGTAGCAG AGACACAGAA GAAGGTGTCT GTGTGCATCA CCGAGTCAAC TGTTTCATTT
  R
  GTTATCCGGG AGGTAAAGCC GTGGGGAGAA ATGGAACCTA GTTGTGAGCG ACTCACACGG
  CCCAGTGAAG TAACCTTTAG CCAACAGCTG TAATGTGAAA GGGCCATGCC AAGAACAACA
  GAGCACAGTG GAGTTCCTGT CCCTTCTAGG AGGACAGCTG AAGCTGTGGC CGGATTTAAC
  AACAAAACAA AACAAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359366499	MGP_WTSI_3_116669858	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257754421					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359366499	MGP_WTSI_3_116669858	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116760589 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			1327 bp upstream
Cpgi13743	CpG island 13743			1653 bp proximal
Gm52613	predicted gene, 52613			254 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			305 bp distal
Rr583815	regulatory region 583815			within coordinates
Rr583816	regulatory region 583816			133 bp distal
Rr583817	regulatory region 583817			1237 bp proximal
Rr583818	regulatory region 583818			1908 bp proximal
Tssr35360	transcription start site region 35360			1598 bp downstream
Tssr35361	transcription start site region 35361			1623 bp downstream
Tssr35362	transcription start site region 35362			1688 bp downstream
Tssr35363	transcription start site region 35363			1736 bp downstream
Tssr35364	transcription start site region 35364			1772 bp downstream
Tssr35365	transcription start site region 35365			1832 bp downstream
Tssr35366	transcription start site region 35366			1850 bp downstream
Tssr35367	transcription start site region 35367			1887 bp downstream
Tssr35368	transcription start site region 35368			1988 bp downstream