rs257741787 SNP Detail

Summary

• ID
  rs257741787
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:79995132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agccaaata cttatgcaca taaaatGTGT
  AGGTGTCTGA TACAAATTCA GTGAGAAATA TAAATTTTTG AAAATCACTC ATTTCAGATT
  TTTTTTTTAA TTTCATCAGT ACTAATTTCA GGATAGTCTG CAAATTTTAG AAAAGGGCCA
  S
  GATAATATAG GAGAATGCTC TTGTTTCTTT CAGGGTGGTA GGCACAACAG AACAGATTAT
  TTGCACAAGA AAAAGTTCAT TGGAAAAGTG AATGAGTGTT AAGAGAAACA ACTGCAATAA
  TATTGACAAG CTTTAGTTCA GTTATTGTCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321836049	CHEV_6_79968143	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257741787					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79995132 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	728 bp upstream
Rr632526	regulatory region 632526	538 bp proximal
Rr632527	regulatory region 632527	749 bp proximal
Rr632528	regulatory region 632528	1004 bp proximal
Rr632529	regulatory region 632529	1505 bp proximal
Tssr57230	transcription start site region 57230	756 bp upstream
Tssr57231	transcription start site region 57231	808 bp upstream
Tssr57232	transcription start site region 57232	859 bp upstream
Tssr57233	transcription start site region 57233	919 bp upstream