rs257738109 SNP Detail

Summary

• ID
  rs257738109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98889263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGTATA GACCAGTTTA
  TAACAGCAAA CATATTTAAT AGAAATGTGT AAGGTATTTA CTGACAAAAT AGGAATATTT
  TGCTTTTTTC TAACTCAAGT AAAATAAAAA AATTCATACT TACTTTGAAC TTAAATACAT
  CTTAAAATTA AGAATAAATC AAATACTTCA ATAACTCTCA TAAGTGGATA GCATGTCCTC
  R
  GTTTACCTTA CTGCCAATGA TTGACCGAAC TTCATCATCT GGTGATGTGG GAGTCCCAGA
  TATATCTGGG TTACTGTTGC TAAGGCTTCG AGACCGATTT AAGTTAAGGC TCGCAGGTCT
  CACTGCAGAC CTAGCCATTG TGGCATAATG CACTGATCCT CCCAAACCCC CGGGACCTAG
  AGTTGCAATA AAGAGCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222468	CHEV_4_98667717	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257738109					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98889263 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr595814	regulatory region 595814			366 bp distal
Tssr42518	transcription start site region 42518			1045 bp upstream