rs257722644 SNP Detail

Summary

• ID
  rs257722644
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110051041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCGTTGA TGGCTGCGAG
  ACGCGACGCA CCCAAAGTCC GTTTGATGAA ATATACATGG CCCCAAGATG CTTCGGGATT
  GCGGTTCGCC GCTACCCAGC CCCCGCCCGC GGCGCCCGGC CGGGACCCTG CTCCCAGCCC
  GCAGCCAGCT CTCGGCAAAC TTAGGGGCGC GGACGAATTA GAGAGTGAGC GCCAGGGGCC
  S
  GCAAAGCGAC GAGCGACGAA ACAGCCCCAG GAAGCCGCAG CCCTCGGAGG GGTGGCGTGT
  TCTTCTCACT TAAAAAGCAG ATCTTCTGCA ACTGCCAGCG AGTGGAAGGA TTGCAAAAAA
  ACCTTACACT ACCTCGAGAC CTGGGCGCTC CGAGCGGTCC TAACTCCGTC CCGCTCGCTG
  CTTCTACTGC TGCTGCTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359205335	MGP_WTSI_3_109946643	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257722644					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359205335	MGP_WTSI_3_109946643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110051041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			within coordinates
Ntng1	netrin G1			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			732 bp distal
Rr583464	regulatory region 583464			1876 bp distal
Rr583465	regulatory region 583465			1681 bp distal
Rr583466	regulatory region 583466			771 bp distal
Rr583467	regulatory region 583467			231 bp distal
Rr583468	regulatory region 583468			276 bp proximal
Rr583469	regulatory region 583469			985 bp proximal
Tssr1022	transcription start site region 1022			315 bp downstream
Tssr31305	transcription start site region 31305			1791 bp upstream
Tssr35233	transcription start site region 35233			967 bp upstream
Tssr35234	transcription start site region 35234			715 bp upstream
Tssr35235	transcription start site region 35235			200 bp upstream
Tssr35236	transcription start site region 35236			146 bp upstream
Tssr35237	transcription start site region 35237			34 bp upstream
Tssr35238	transcription start site region 35238			10 bp upstream
Tssr35239	transcription start site region 35239			61 bp downstream
Tssr35240	transcription start site region 35240			212 bp downstream