rs257691546 SNP Detail

Summary

• ID
  rs257691546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9465120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCAGGG TGCTGGGATA
  AAAGGTGCCC CCCACCCCCC CACCCCCGGC TGGTATTTTT GTTTTATGTG TATACACAGG
  CTTCATATGT AGATGCCAGT GAGGGCTTAA AAAAGGTATA GAATTCCCTA GTTTGGGAAT
  TGTGAGCTGT GCAAAGTGGG CACCAAGGCC CTCTGGAAGA GCAGAATGTC CTTAACCTCC
  R
  AGTTGTCTGT CAGTCCCCAA CTCGTGTTTT AAAAAAATCT ATATCAGGCC TGGGGATATA
  CCTCATCCGA TAAAGTGCTT GCTTAGCATC TGTGAAGCCC TAGGTCATAG AAAGGCGGTG
  GTGCATCTCT GTAATGTCAG CATTTTGGAG GTGAAGGGCA GGTGGTCAGG AGTTCAAGGT
  TGTCCTTAAC TCTGCAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320650885	CHEV_3_9400060	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257691546					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9465120 () rs orientation: forward

Symbol	Name	Function Class
Rr374488	regulatory region 374488	within coordinates
Rr573417	regulatory region 573417	1523 bp distal
Rr573418	regulatory region 573418	80 bp proximal
Rr573419	regulatory region 573419	291 bp proximal