rs257688538 SNP Detail

Summary

• ID
  rs257688538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104960997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAGACG CTGGGGTGGA
  AGCACCTGGT AGAGAGCATA ACCCCTACCG ACTTGCCTTT CAGGGCAAAG CCAAATAGCT
  GCAAACTTAC CTGGTGTTTC CCCACACTGT GCTTGCCATT CATGTATGTG GGGGGCTATT
  TTATATGTTT GGGCCCCGTC ATACCGTGGA CCATGCATTT GTAACGAAGC CGAAACGGAA
  M
  AGTAGGATGA GGGGAAATGG CTGGCCTCTT GAGCACAGGA ATGCAGATCT TAGTGATAGA
  AACAAGACCT GGAGGGAAGA GATTGCACTC TACCATACAT AGCCTGCACT TCAGCACCAC
  AAGTGACTGA ACTGTTTAAA TAGCCGCATT GCTTTAAAGA ACTTGTAACA CGTACATATA
  AGAACTCAAG TATTTGAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359101382	MGP_WTSI_3_104856599	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257688538					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359101382	MGP_WTSI_3_104856599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104960997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	438 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	535 bp upstream
Rr367520	regulatory region 367520	531 bp downstream
Rr582659	regulatory region 582659	741 bp distal
Rr582660	regulatory region 582660	45 bp distal
Rr582661	regulatory region 582661	859 bp proximal
Tssr34913	transcription start site region 34913	1107 bp upstream
Tssr34914	transcription start site region 34914	964 bp upstream
Tssr34915	transcription start site region 34915	743 bp upstream
Tssr34916	transcription start site region 34916	694 bp upstream
Tssr34917	transcription start site region 34917	530 bp upstream
Tssr34918	transcription start site region 34918	1195 bp downstream