rs257660404 SNP Detail

Summary

• ID
  rs257660404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21950669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATGGAA GACACTTAGA
  GCTGTGAACA GCGTGGACAC TTTCTCAGCC AGAAATGAGT GAGAGAGATC AGATTTTAAG
  GAAATCACCC GCTTGCTCTT TAGAAAACTG TAGACGTTTG ATAGGCTTCC CTACTGGTTT
  CTTGTTTTGT AAACACAACC ACGTCATTCA GGCTGGTCTC ACACTCAATA TGTATAATAA
  Y
  CCTAGGCTTG CTCTAATCTC CTCATCTTCC TGCTTCTGTC TGCCTAGTGC TTGGCTTTTC
  AGGCATTGCT AGCATTGATT TTTTTTTCTG TCAGTGCTTG GCAGCTTTAT ATGTGACTTA
  TTTCCAAAAT GAACCTTGTT CTTTTGAAAA AGCCAGACTG GAAGAGGCTC AAAGGTAACT
  TGAGTTTGCT AAGGGCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367639708	MGP_WTSI_6_21900670	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257660404					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367639708	MGP_WTSI_6_21900670	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21950669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17189	CpG island 17189	242 bp distal
Gm68432	predicted gene, 68432	1152 bp upstream
Ing3	inhibitor of growth family, member 3	Intron
Rr399583	regulatory region 399583	1170 bp downstream
Rr399584	regulatory region 399584	495 bp downstream
Rr627030	regulatory region 627030	1312 bp distal
Rr627031	regulatory region 627031	1003 bp distal
Rr627032	regulatory region 627032	within coordinates
Rr627033	regulatory region 627033	644 bp distal
Tssr55136	transcription start site region 55136	987 bp downstream
Tssr55137	transcription start site region 55137	608 bp downstream
Tssr55138	transcription start site region 55138	269 bp downstream