rs257645316 SNP Detail

Summary

• ID
  rs257645316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACATATG CACTCCTTAC
  TGGTTCTGTT CACTGTGTAC TCAAAAATGG CCAGCTCTAA TTAAGATGAC TTCAGTTCCC
  AGTTCCTGCC ACAAGACCCA TAAAAGCCCA TGGCAGGGCA ACATGGGGTT TCCATCTGTG
  GAGCCCCTCT CATTTTCACT CTTGGGATTC TGGGTTGTTT TTTTTGTTGT TGTTGTTGTT
  R
  TTAATTAATT AATTAATTAT AATAATAATA ATTATTATTC TTTAATTCTT TTTACATCCA
  GTCATTATCC CCCTCCCAGT CCACCCTCTG ACTGTTCCTC ATTCCATTCC TCTCCCGCTC
  TCCTCCTCCT ATGCCCCCCC ATCTCCAAGA GGATGTCCCT ACCCCACCCC ACCCCATCCC
  ACCAGACCTC CCCACTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352044670	MGP_WTSI_1_158679975	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257645316					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352044670	MGP_WTSI_1_158679975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	1162 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	879 bp distal
Rr421243	regulatory region 421243	77 bp distal
Rr421244	regulatory region 421244	62 bp proximal
Rr421245	regulatory region 421245	1914 bp proximal