rs257642779 SNP Detail

Summary

• ID
  rs257642779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52787833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGAGAC CTAGAGGAAC
  TTGCCTCTCT TGTGATCCTG GGAATTTTAT TTATTCATTA CTAATTTACA TCAATGGGAG
  GGGAGGCCTG TGGAGTTTGA TGCCCCAGTG TAGGGGGATG CTGGAGGGGT GGAGAGGGTA
  CATGGGTGGG GGAGCACCCT CATAGAGGCA AAGGGAAGGG AGGAGAGGGA GGTTGTGGGG
  Y
  GAGGACCTTG TGGAAGTGGG ATATTGTGTG AGATGTAAGT GAATGGAATG ATTAATAAAT
  AAAATAAAAT ACTTTTAAAT GGGAAATATT TTTAAACTTA GATAACTCTA AATAAAATTA
  GTGCAAACAC ACCTGCAACC CCTTATTCAT ATGCTTTCTT ACTTGTGATC TGCCTGTCTG
  TCCACCTGCC TATCTTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765675	CHEV_3_52684334	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257642779					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52787833 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	1594 bp distal
Rr576596	regulatory region 576596	386 bp distal
Rr576597	regulatory region 576597	1663 bp proximal