rs257620559 SNP Detail

Summary

• ID
  rs257620559
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152423429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCGGGG TCGAAACGGG
  GGGGTGGAGG TTTGGGGGGC TGGGGGGGCC GGCGGCCGCC ATCTTCTTGC CGAGACCGCC
  TCGCCCGCCG CGCGGGTCCG TCCGGCAGCG CACGGGTTAA GGCTGGCACC GCGCCCGGCG
  GGAGGGGGGC GCCCACCTTC CTTCCCCCCC CGCGCCGGGC ATGCGGGGCC CGCTGGGCAC
  S
  GAGGAGGAGC TGCCGCGGCT GTTCGCGGAG GAGATGGAGA ACGAGGAGGA GATGTCAGGT
  GAGGGGGCGC GGGGACCTGC TGGCCCGGGA CGCGGGAGGG GCGCGAGGCT GCGGGCTGCG
  CTCCCGCCCT GCTGGCGCCG CGCTAGCCAA GGGCGCGGGG CCGGGCGAGC TCCCGGGCGC
  GGCGCGCGGG GCGGGGTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363710645	MGP_WTSI_4_151713081	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257620559					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363710645	MGP_WTSI_4_151713081	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152423429 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Coding-Synonymous
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	75 bp distal
Rr605853	regulatory region 605853	within coordinates
Rr605854	regulatory region 605854	1992 bp proximal
Tssr40549	transcription start site region 40549	263 bp downstream
Tssr40550	transcription start site region 40550	210 bp downstream
Tssr40551	transcription start site region 40551	127 bp downstream
Tssr40552	transcription start site region 40552	5 bp downstream
Tssr40553	transcription start site region 40553	2 bp upstream