rs257552618 SNP Detail

Summary

• ID
  rs257552618
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107837468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGGTACC ACACAGGTTG TTTCCAGGCA
  CAGCCAGCCA GAAGCACTGT TCTGACCGAA TCAGATGCCA GGCCTCAGCG GACTTACTCC
  ACCAGAACTA ACAAGGGACT CAAAGTAGGG TGAGGTTTCA AAGTCTATTA AAAAACTGAT
  T
  GTTTTGGGTT CCAGCCTCCT TCCAGCTGGA CAGCTGAAGA ACCTGGCTTG AGGGGTGCTA
  CACCTCCACC CCAGGGGCTC CTGGCTGTGC CCCAGGAGTT GGTGGCTTTC TGTAGCATCT
  GCTCCAGGGA AGCAGAGGAC ACAGCCAGCT                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251888	CHEV_4_107652876	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257552618					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107837468 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			126 bp distal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant
Tssr1254	transcription start site region 1254			1416 bp upstream